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Macromolecular Crystallography Software

The table below lists all the crystallographic software programs installed on the SSRL computers. Programs that are fully supported by SSRL staff are regularly updated (usually within 2-3 months of the version release) and thoroughly tested in the beamline environment. Unsupported programs are also available, but no guarantees are made as to updates, configuration, testing, etc.

Older versions of some programs are also available. To find out which versions are available, use the "module" command:

  • module list (list the currently active version of the programs).
  • module avail (list all available versions of the programs).
  • module switch "default-version" "another-version" (changes the current default version of the program with the desired version).

Please click on the program name to access the program home page.

ProgramSSRL ManualProgram ManualCurrent VersionLast updateExpiration dateLicense contact/Download siteUser Support
Data processing and strategy
Mosflm Mosflm-Scala tutorialManual7.0.3June 2008noneDownload from MOSFLM site
Download from CCP4 site
yes
imosflm Not availableManual0.5.3August 2007noneDownload no
Scala Mosflm-Scala tutorialManual3.2.25September 2006noneDownload from CCP4 siteyes
HKL2000 HKL2000 tutorialPurchase HKL2000 manual or use
HKL Manual (PDF)
0.98.691g(blcpu1-4) 0.97.647d (blcpu5) 0.98.698d(blcpu1l)June 2007May 2009Iwona Minoryes
XDS/XSCALE XDS tutorialManualSeptember 10, 2008??? 2008December 2008Downloadyes
Web-Ice Web-Ice GuideManual (PDF)4.5September 2006noneAna Gonzalezyes
Labelit Not availableManual1.000rc4August 2007noneDownloadyes
BESTNot availableManual3.1.0cJanuary 2007noneDowloadno
RADDOSE Not availableManual6.0March 2006noneElspeth Garmanno
Phasing and Refinement
CCP4Not availableManual6.0.2January 2007noneDownloadyes
Solve/ResolveNot availableSolve Manual
Resolve Manual
2.13November 2007October 2008Downloadyes
SHELXNot availableSHELX Manual (PDF)
SHELXC/D/E Manual (PDF)
2006/3January 2007April 2008Downloadyes
SnBNot availableManual2.2May 2006noneDownloadno
SHARP/autoSHARPNot availableManual2.2.0April 2006noneDownloadno
ARP/wARPNot availableManual (PDF)7.0.1January 2008noneDownloadno
PHASESNot availableManual2.0.4November 2005noneDownloadno
CNSNot availableManual1.2January 2007noneDownloadno
PhaserNot availableManual1.3.3January 2007noneDownloadno
Model Building and Molecular Graphics
CootCoot tutorialManual (PDF)0.4.1January 2008noneDownloadyes
ONot availableManual10.0.1December 2007noneDownloadno
USFNot availableManualN/AJuly 2004noneUSF siteno
XtalViewNot availableManualN/A???noneDownloadno
PyMOLNot availableManual0.98July 2005noneDownloadno
Turbo FrodoNot availableManual (PDF)SGI.3May 2004noneDownloadno
MolScriptNot availableManual2.1.2October 1999noneDownloadno
RasMOLNot availableManual2.7.2.1January 2007 /(CCP4 installation)noneDownload from RasMOL site
Download from CCP4 site
no
Raster3DNot availableManual2.7???noneDownloadno
LIGPLOTNot availableManual4.4.2???nonedownloadno